PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G7N4X
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 167aa    MW: 18340 Da    PI: 11.6372
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G7N4XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-054969323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++Cgk F r  nL+ H r H
  Aradu.G7N4X 49 CEICGKGFQRDQNLQLHRRGH 69
                 *******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.35E-54570No hitNo description
Gene3DG3DSA:3.30.160.601.0E-54669IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4894769IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MSNFTPPPPT QTHGQVNKKK RSLPGNPDPD AEVIALSPKT LMATNRFLCE ICGKGFQRDQ  60
NLQLHRRGHN LPWKLKQRTK TEVVRKKVYV CTSPESRSTF AGSTARRSGN ATSALRSTPF  120
NPTGKLTPKP AALASTDATA APSSQGGTVL SRTERFVMRL QKKAREL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17586KQRTKTEVVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3545621e-50AK354562.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008H21.
GenBankAK3574011e-50AK357401.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201835.12e-61PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A059AIB52e-46A0A059AIB5_EUCGR; Uncharacterized protein (Fragment)
STRINGBGIOSGA002939-PA1e-43(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1535369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.15e-44C2H2 family protein